Optimized Cluster-Enabled HMMER Searches, J. P. Walters, J.
Landman, and V. Chaudhary. To appear in Grids for
Bioinformatics and Computational Biology, Edited by El-Ghazali
Talbi and Albert Zomaya, Wiley & Sons, 2007.
MPI-HMMER-Boost: Distributed FPGA Acceleration, J. P.
Walters, X. Meng, V. Chaudhary, T. Oliver, L. Y. Yeow, B.
Schmidt, D. Nathan, and J. Landman. To appear in the Special
Issue on Computing Architectures and Acceleration for
Bioinformatics Algorithms, The Journal of VLSI Signal
Accelerating HMMer searches on Opteron processors with
minimally invasive recoding, J. Landman, J. Ray, and J.P.
Walters. In HiPCOMB 2006, Vienna Austria.
Accelerating the HMMER Sequence Analysis Suite Using
Conventional Processors, J.P Walters, B. Qudah, V. Chaudhary.
In AINA 2006, Vienna, Austria.