Book Chapters:

Optimized Cluster-Enabled HMMER Searches, J. P. Walters, J. Landman, and V. Chaudhary. To appear in Grids for Bioinformatics and Computational Biology, Edited by El-Ghazali Talbi and Albert Zomaya, Wiley & Sons, 2007.

Journal Articles:

MPI-HMMER-Boost: Distributed FPGA Acceleration, J. P. Walters, X. Meng, V. Chaudhary, T. Oliver, L. Y. Yeow, B. Schmidt, D. Nathan, and J. Landman. To appear in the Special Issue on Computing Architectures and Acceleration for Bioinformatics Algorithms, The Journal of VLSI Signal Processing, 2007.

Conference Articles:

Accelerating HMMer searches on Opteron processors with minimally invasive recoding, J. Landman, J. Ray, and J.P. Walters. In HiPCOMB 2006, Vienna Austria.

Accelerating the HMMER Sequence Analysis Suite Using Conventional Processors, J.P Walters, B. Qudah, V. Chaudhary. In AINA 2006, Vienna, Austria.